Intrinsic Limits of Read Trimming in Single-Stranded Bisulfite Sequencing

arXiv:2601.19002v1 Announce Type: new Abstract: Single-stranded whole-genome bisulfite sequencing (ssWGBS) enables DNA methylation profiling in low-input and highly fragmented samples, including cell-free DNA, but introduces stochastic enzymatic artifacts that complicate preprocessing and downstream interpretation. In post-bisulfite library construction, Adaptase-mediated tailing blurs the boundary between biological sequence and synthetic additions, rendering read trimming a persistent source […]

Algorithmic Prompt-Augmentation for Efficient LLM-Based Heuristic Design for A* Search

arXiv:2601.19622v1 Announce Type: new Abstract: Heuristic functions are essential to the performance of tree search algorithms such as A*, where their accuracy and efficiency directly impact search outcomes. Traditionally, such heuristics are handcrafted, requiring significant expertise. Recent advances in large language models (LLMs) and evolutionary frameworks have opened the door to automating heuristic design. In […]

RIFT: Reordered Instruction Following Testbed To Evaluate Instruction Following in Singular Multistep Prompt Structures

arXiv:2601.18924v1 Announce Type: new Abstract: Large Language Models (LLMs) are increasingly relied upon for complex workflows, yet their ability to maintain flow of instructions remains underexplored. Existing benchmarks conflate task complexity with structural ordering, making it difficult to isolate the impact of prompt topology on performance. We introduce RIFT, Reordered Instruction Following Testbed, to assess […]

Agentic Design Patterns: A System-Theoretic Framework

arXiv:2601.19752v1 Announce Type: new Abstract: With the development of foundation model (FM), agentic AI systems are getting more attention, yet their inherent issues like hallucination and poor reasoning, coupled with the frequent ad-hoc nature of system design, lead to unreliable and brittle applications. Existing efforts to characterise agentic design patterns often lack a rigorous systems-theoretic […]

CASTER: Breaking the Cost-Performance Barrier in Multi-Agent Orchestration via Context-Aware Strategy for Task Efficient Routing

arXiv:2601.19793v1 Announce Type: new Abstract: Graph-based Multi-Agent Systems (MAS) enable complex cyclic workflows but suffer from inefficient static model allocation, where deploying strong models uniformly wastes computation on trivial sub-tasks. We propose CASTER (Context-Aware Strategy for Task Efficient Routing), a lightweight router for dynamic model selection in graph-based MAS. CASTER employs a Dual-Signal Router that […]

Explainable Uncertainty Quantification for Wastewater Treatment Energy Prediction via Interval Type-2 Neuro-Fuzzy System

arXiv:2601.18897v1 Announce Type: new Abstract: Wastewater treatment plants consume 1-3% of global electricity, making accurate energy forecasting critical for operational optimization and sustainability. While machine learning models provide point predictions, they lack explainable uncertainty quantification essential for risk-aware decision-making in safety-critical infrastructure. This study develops an Interval Type-2 Adaptive Neuro-Fuzzy Inference System (IT2-ANFIS) that generates […]

Routing End User Queries to Enterprise Databases

arXiv:2601.19825v1 Announce Type: new Abstract: We address the task of routing natural language queries in multi-database enterprise environments. We construct realistic benchmarks by extending existing NL-to-SQL datasets. Our study shows that routing becomes increasingly challenging with larger, domain-overlapping DB repositories and ambiguous queries, motivating the need for more structured and robust reasoning-based solutions. By explicitly […]

LLM Driven Design of Continuous Optimization Problems with Controllable High-level Properties

arXiv:2601.18846v1 Announce Type: new Abstract: Benchmarking in continuous black-box optimisation is hindered by the limited structural diversity of existing test suites such as BBOB. We explore whether large language models embedded in an evolutionary loop can be used to design optimisation problems with clearly defined high-level landscape characteristics. Using the LLaMEA framework, we guide an […]

Hyperdisorder in tumor growth

arXiv:2601.19852v1 Announce Type: new Abstract: Tumor growth is constrained by spatial, mechanical, and metabolic factors whose alignment progressively breaks down across cellular, mesoscopic, and tissue scales as tumors expand. We hypothesize that this misalignment drives tumors toward a distinct architectural regime, termed hyperdisorder. Hyperdisorder is not defined by increased heterogeneity alone, but by the coexistence […]

Agentic Business Process Management Systems

arXiv:2601.18833v1 Announce Type: new Abstract: Since the early 90s, the evolution of the Business Process Management (BPM) discipline has been punctuated by successive waves of automation technologies. Some of these technologies enable the automation of individual tasks, while others focus on orchestrating the execution of end-to-end processes. The rise of Generative and Agentic Artificial Intelligence […]

Encoder-Free ECG-Language Models

arXiv:2601.18798v1 Announce Type: cross Abstract: ECG-Language Models (ELMs) extend recent progress in Multimodal Large Language Models (MLLMs) to automated ECG interpretation. However, most ELMs follow Vision-Language Model (VLM) designs and depend on pretrained ECG encoders, adding architectural and training complexity. Inspired by encoder-free VLMs, we introduce ELF, an encoder-free ELM that replaces the ECG encoder […]

“Not in My Backyard”: LLMs Uncover Online and Offline Social Biases Against Homelessnes

arXiv:2508.13187v2 Announce Type: replace-cross Abstract: Homelessness is a persistent social challenge, impacting millions worldwide. Over 876,000 people experienced homelessness (PEH) in the U.S. in 2025. Social bias is a significant barrier to alleviation, shaping public perception and influencing policymaking. Given that online textual media and offline city council discourse reflect and influence part of public […]

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