Planarian fragments can regenerate with normal gross anatomy after a transient bioelectric perturbation yet display altered outcomes upon re-cutting, implying that regeneration can store a persistent hidden state. Here we formulate an open-path version of Tangential Action Spaces (TAS) for this setting. Regeneration after a given cut is represented as a prescribed coarse anatomical trajectory […]

Genome-wide association studies (GWAS) have implicated thousands of loci in complex diseases, but translating these population-level signals into specific cellular contexts remains a central challenge. Integrating GWAS with single-cell transcriptomics data has enabled systematic identification of disease-relevant cell types, yet existing methods face a fundamental tradeoff: approaches like seismic that optimized for statistical power operate […]

The architecture of the genotype-phenotype-fitness map (GPFM) is a key determinant of evolutionary dynamics. One salient feature of biological GPFMs is variational modularity, where each mutation affects only a small subset of functional traits. Variational modularity may constrain the dynamics of trait evolution, but these constraints are not well understood. Here, we use several extensions […]