Large language models (LLMs) are poised to reshape how biologists retrieve specialized knowledge at scale. Yet their performance on deep, domain-specific queries is poorly defined because much biological information resides in structured databases or large experimental datasets rather than in a free text format. One such gap in cellular biology lies in identifying major macromolecular […]

Obsessive-compulsive disorder (OCD) is characterized, in part, by repetitive, sequential behaviors, such as cleaning rituals, yet underlying neural circuitry related to abstract sequencing in OCD remains poorly understood. Prior work has implicated a set of cortical regions activated during abstract sequences, which are defined by rules rather than specific stimulus features (Desrochers et al., 2022). […]

Listening in complex environments requires the enhancement of relevant sounds and suppression of irrelevant ones. Corticothalamic neurons (CTNs) in auditory cortex layer (L) 6 provide modulatory feedback to thalamic nuclei and to upper cortical layers and are thought to be involved in gain control. However, their role in auditory processing remains unclear. We used in […]

Physical, chemical, and biological factors collectively determine antibiotic effectiveness. However, laboratory studies often consider only one or two of these factors and fail to capture key interaction effects. Here, we use microfluidics to study the interplay of host-relevant shear flow, the antibiotic gentamicin, and the human pathogen Pseudomonas aeruginosa. We discover bacterial populations can defend […]

Abstract Cohesin is best known for its role in loop extrusion, while nucleosome phasing at regulatory elements is usually attributed to local DNA-bound factors and remodelers. Here we identify a previously unrecognized role for cohesin-mediated extrusion in maintaining local nucleosome architecture at CTCF sites and transcription start sites. Using single-molecule nano-NOMe-seq during SCC1 depletion, cell-cycle […]

In-depth understanding of the 3D organization of the genome and its role in the regulation of gene expression requires techniques to measure complex chromosome conformations at single alleles at high resolution. Here, we present multi-way Micro-Capture-C (mwMCC), a method to detect concurrent interactions between multiple chromatin regions at single alleles at sub-nucleosome resolution. mwMCC resolves […]

The heart needs to adapt its output to the metabolic demands of the organism. Phosphorylation of the myosin motors by cardiac myosin light chain kinase (cMLCK) increases heart muscle contractile function, yet its regulation and mechanism of action have remained unclear. Here, we show that cMLCK undergoes liquid-liquid phase separation and forms biomolecular condensates associated […]

The efficiency of marine diatom carbon concentrating mechanisms (CCMs) play a critical role in photosynthesis and enable cells to maintain rapid growth rates under a variety of environmental conditions. To assess the plasticity of the model diatom P. tricornutums CCMs, specifically carbonic anhydrase (CA) enzymes and bicarbonate transporters, we measured growth response, bulk CA activity, […]