arXiv:2604.06279v1 Announce Type: cross
Abstract: Accurate parameter selection is fundamental to gyrokinetic plasma simulations, yet current practices rely heavily on manual literature reviews, leading to inefficiencies and inconsistencies. We introduce Plasma GraphRAG, a novel framework that integrates Graph Retrieval-Augmented Generation (GraphRAG) with large language models (LLMs) for automated, physics-grounded parameter range identification. By constructing a domain-specific knowledge graph from curated plasma literature and enabling structured retrieval over graph-anchored entities and relations, Plasma GraphRAG enables LLMs to generate accurate, context-aware recommendations. Extensive evaluations across five metrics, comprehensiveness, diversity, grounding, hallucination, and empowerment, demonstrate that Plasma GraphRAG outperforms vanilla RAG by over $10%$ in overall quality and reduces hallucination rates by up to $25%$. {Beyond enhancing simulation reliability, Plasma GraphRAG offers a methodology for accelerating scientific discovery across complex, data-rich domains.
The Central Coupler of the AAA+ ATPase ClpXP Controls Intersubunit Communication and Couples the Conversion of Chemical Energy into the Generation of Force
ClpX is a clockwise hexameric helical arrangement that hydrolyzes ATP to unfold proteins and translocate them into the proteolytic chamber. We investigate the central coupler,


