arXiv:2510.16822v3 Announce Type: replace-cross
Abstract: Coral reefs are rapidly declining under anthropogenic pressures (e.g., climate change), creating an urgent need for scalable and automated monitoring. Progress in data-driven coral analysis, however, is constrained by the scarcity of large-scale datasets with fine-grained labels that are taxonomically consistent across sites and studies. To address this gap, we introduce ReefNet, a large-scale public coral reef image dataset with point-level annotations mapped to the World Register of Marine Species (WoRMS) taxonomy. ReefNet aggregates imagery from 76 curated CoralNet sources and an additional reef site from Al-Wajh (Red Sea), totaling approximately 925K genus-level hard coral annotations. Through expert-driven verification and targeted filtering, we derive a high-confidence benchmark subset with 92% expert agreement over 39 hard-coral label classes, enabling reliable evaluation under realistic label noise and strong class imbalance. Beyond dataset construction, we establish a comprehensive benchmark spanning zero-shot, cross-domain few-shot adaptation, within-source evaluation, and cross-source transfer to the Al-Wajh dataset. Experiments with state-of-the-art vision-language models (VLMs), multimodal large language models (MLLMs), and vision-only backbones reveal substantial degradation in zero-shot and extremely few-shot regimes, while adaptation with in-domain supervision yields large gains yet still leaves a persistent gap under cross-source shift and on long-tail genera. These results highlight fundamental challenges in applying general-purpose multimodal models to biodiversity monitoring and underscore the importance of large-scale, taxonomically grounded, high-quality datasets. ReefNet serves as both a benchmark and a training resource for advancing fine-grained coral reef understanding.
Coordinated Temporal Dynamics of Glucocorticoid Receptor Binding and Chromatin Landscape Drive Transcriptional Regulation
Glucocorticoid receptor (GR) signaling elicits diverse transcriptional responses through dynamic and context-dependent interactions with chromatin. Here, we define a temporally resolved and mechanistically integrated framework


